WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y55F3AL.1b.1 Sequence Name  Y55F3AL.1b.1
Length (nt)  6554   Chromosome Location  IV: 959521-984392
Chromosome . Primary Identifier  IV Chromosome Location . Start  959521
Chromosome Location . End  984392 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y55F3AL.1b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004047 plx-1 Y55F3AL.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y55F3AL.1b Y55F3AL.1b 5871   IV: 959521-959658

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:Y55F3AL.1b.1 959521 984392 1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

24 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon112681   138   IV: 959521-959658 Caenorhabditis elegans
Exon112683   130   IV: 960846-960975 Caenorhabditis elegans
Exon112685   116   IV: 963030-963145 Caenorhabditis elegans
Exon112687   302   IV: 964140-964441 Caenorhabditis elegans
Exon112691   246   IV: 965737-965982 Caenorhabditis elegans
Exon112695   266   IV: 967066-967331 Caenorhabditis elegans
Exon112699   137   IV: 967901-968037 Caenorhabditis elegans
Exon112703   317   IV: 968662-968978 Caenorhabditis elegans
Exon112707   254   IV: 969803-970056 Caenorhabditis elegans
Exon112711   182   IV: 971064-971245 Caenorhabditis elegans
Exon112715   108   IV: 971307-971414 Caenorhabditis elegans
Exon112719   107   IV: 971876-971982 Caenorhabditis elegans
Exon112723   550   IV: 972373-972922 Caenorhabditis elegans
Exon112729   151   IV: 973764-973914 Caenorhabditis elegans
Exon112735   172   IV: 974470-974641 Caenorhabditis elegans
Exon112741   126   IV: 975269-975394 Caenorhabditis elegans
Exon112747   150   IV: 975450-975599 Caenorhabditis elegans
Exon112753   460   IV: 976199-976658 Caenorhabditis elegans
Exon112759   510   IV: 977242-977751 Caenorhabditis elegans
Exon112765   354   IV: 978858-979211 Caenorhabditis elegans
Exon112773   159   IV: 980654-980812 Caenorhabditis elegans
Exon112777   434   IV: 981560-981993 Caenorhabditis elegans
Exon112783   388   IV: 982729-983116 Caenorhabditis elegans
Exon112792   797   IV: 983596-984392 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:Y55F3AL.1b.1 959521 984392 1

1 Sequence

Length
6554

1 Sequence Ontology Term

Identifier Name Description
transcript