WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y55F3BR.2a.1 Sequence Name  Y55F3BR.2a.1
Length (nt)  4847   Chromosome Location  IV: 858930-874724
Chromosome . Primary Identifier  IV Chromosome Location . Start  858930
Chromosome Location . End  874724 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y55F3BR.2a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00021939 Y55F3BR.2 Y55F3BR.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y55F3BR.2a Y55F3BR.2a 4650   IV: 858932-858980

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:Y55F3BR.2a.1 858930 874724 1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

23 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon112533   51   IV: 858930-858980 Caenorhabditis elegans
Exon112534   124   IV: 859031-859154 Caenorhabditis elegans
Exon112535   155   IV: 859780-859934 Caenorhabditis elegans
Exon112536   123   IV: 860128-860250 Caenorhabditis elegans
Exon112537   124   IV: 860776-860899 Caenorhabditis elegans
Exon112538   110   IV: 860950-861059 Caenorhabditis elegans
Exon112539   113   IV: 861107-861219 Caenorhabditis elegans
Exon112540   304   IV: 862099-862402 Caenorhabditis elegans
Exon112543   153   IV: 863222-863374 Caenorhabditis elegans
Exon112545   240   IV: 864027-864266 Caenorhabditis elegans
Exon112547   126   IV: 864934-865059 Caenorhabditis elegans
Exon112549   174   IV: 865734-865907 Caenorhabditis elegans
Exon112551   233   IV: 866063-866295 Caenorhabditis elegans
Exon112553   91   IV: 866540-866630 Caenorhabditis elegans
Exon112555   141   IV: 866684-866824 Caenorhabditis elegans
Exon112557   70   IV: 866874-866943 Caenorhabditis elegans
Exon112561   581   IV: 868662-869242 Caenorhabditis elegans
Exon112564   504   IV: 870182-870685 Caenorhabditis elegans
Exon112567   150   IV: 871564-871713 Caenorhabditis elegans
Exon112570   121   IV: 871831-871951 Caenorhabditis elegans
Exon112573   662   IV: 872494-873155 Caenorhabditis elegans
Exon112576   246   IV: 873857-874102 Caenorhabditis elegans
Exon112581   251   IV: 874474-874724 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:Y55F3BR.2a.1 858930 874724 1

1 Sequence

Length
4847

1 Sequence Ontology Term

Identifier Name Description
transcript