WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00194844 Gene Name  Y55F3C.13
Sequence Name  ? Y55F3C.13 Organism  Caenorhabditis elegans
Automated Description  Enriched in IL2DL; IL2DR; IL2L; IL2VL; and LUAL based on single-cell RNA-seq studies. Is affected by smg-2 and ogt-1 based on RNA-seq studies. Biotype  SO:0000336
Genetic Position  :± Length (nt)  ? 1938
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00194844

Genomics

0 Transcripts

 

Other

0 CDSs

0 RNAi Result

58 Allele

Public Name
gk963722
gk963025
gk963557
gk963558
gk964114
gk964115
WBVar01647220
WBVar01647221
gk318742
gk516062
gk353227
gk822805
gk715272
gk588870
gk829479
gk523651
WBVar01818438
WBVar01818437
WBVar01818436
WBVar01450232
WBVar01818431
WBVar01450231
WBVar01818430
WBVar01608401
WBVar01608402
WBVar01818429
WBVar01450233
WBVar01818428
WBVar01608403
WBVar01818435

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00194844 753731 755668 -1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrIV_753317..753730   414 IV: 753317-753730 Caenorhabditis elegans

4 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly decreased expression in ogt-1(ok1474) neuronal cells isolated by FACs comparing to in FACs isolated neuronal cells from wild type. DESeq2, fold change > 2, FDR < 0.05. WBPaper00066485:ogt-1(ok1474)_downregulated_neuron
  Transcripts that showed increased expression in smg-1(r910) and smg-1(r910) smg-2(r915) mutants comparing to in N2, and their mRNAs co-purify with SMG-2. edgeR WBPaper00053308:SMG-2_associated_NMD(-)_upregulated_ClassI
  Single-cell RNA-Seq cell group 25_1 expressed in neuron. scVI 0.6.0 WBPaper00065841:25_1
  Single-cell RNA-Seq cell group 108_0 expressed in neuron. scVI 0.6.0 WBPaper00065841:108_0

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
    Expr1160986 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/hashimshony2015  

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00194844 753731 755668 -1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
1938

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

1 Upstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrIV_755669..756720   1052 IV: 755669-756720 Caenorhabditis elegans