WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00219599 Gene Name  linc-99
Sequence Name  ? K08E3.14 Organism  Caenorhabditis elegans
Automated Description  Is affected by fzo-1 based on RNA-seq studies. Biotype  SO:0001641
Genetic Position  III :21.4382± Length (nt)  ? 292
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00219599

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:K08E3.14 K08E3.14 219   III: 13740732-13741023
 

Other

0 CDSs

2 RNAi Result

WormBase ID
WBRNAi00056548
WBRNAi00019605

6 Allele

Public Name
gk963887
gk963715
gk963904
gk963552
gk928404
gk618372

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00219599 13740732 13741023 -1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrIII_13736542..13740731   4190 III: 13736542-13740731 Caenorhabditis elegans

2 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcipts that showed significantly increased expression in old (days 24, 14, and 9 of adulthood) octr-1(ok371) comparing to in N2 at 25C. DESeq2 v1.31.16, fold change > 2, FDR < 0.05 WBPaper00068082:octr-1(ok371)_upregulated_old_25C
  Transcripts that showed significantly increased expression in zcIs13; twnEx320[Punc-119-ds-fzo-1] comparing to in zcIs13[Phsp-6-gfp] animals. Fold change >= 1.5. WBPaper00061409:neuronal-fzo-1(RNAi)_upregulated

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00219599 13740732 13741023 -1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
292

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

1 Upstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrIII_13741024..13744221   3198 III: 13741024-13744221 Caenorhabditis elegans