WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00194690 Gene Name  T05D4.6
Sequence Name  ? T05D4.6 Organism  Caenorhabditis elegans
Automated Description  Is affected by spr-5; met-2; and ilc-17.1 based on RNA-seq studies. Biotype  SO:0001263
Genetic Position  :± Length (nt)  ? 1672
Paste the following link
Quick Links:
SummaryGenomicsOther
 
Quick Links:
SummaryGenomicsOther
 
Lists
This Gene isn't in any lists. Upload a list.

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00194690

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:T05D4.6 T05D4.6 822   III: 13570854-13572525
 

Other

0 CDSs

0 RNAi Result

29 Allele

Public Name
gk963887
WBVar00182722
gk680977
WBVar01833142
WBVar01568377
gk963715
WBVar00246091
gk447516
gk822800
gk867372
gk190753
gk614358
gk474699
gk190751
gk764491
gk190752
gk190749
gk549798
gk190750
gk507407
gk190747
gk655874
gk190748
gk742182
WBVar00222436
gk945236
gk963904
WBVar01568378
gk963552

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00194690 13570854 13572525 1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrIII_13572526..13576181   3656 III: 13572526-13576181 Caenorhabditis elegans

2 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in ilc-17.1(syb5296) comparing to in N2 animals at L4 larva stage. DESeq2, fold change > 2, FDR < 0.05. WBPaper00066594:ilc-17.1(syb5296)_upregulated
  Transcripts that showed significantly increased expression in spr-5(by101);met-2(n4256) L1 animals comparing to in N2 control. DeSeq2 (v.2.11.40.2), p < 0.05. WBPaper00060886:spr-5(by101);met-2(n4256)_upregulated

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00194690 13570854 13572525 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
1672

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

1 Upstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrIII_13570448..13570853   406 III: 13570448-13570853 Caenorhabditis elegans