WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y111B2A.4a.1 Sequence Name  Y111B2A.4a.1
Length (nt)  4226   Chromosome Location  III: 12499557-12528052
Chromosome . Primary Identifier  III Chromosome Location . Start  12499557
Chromosome Location . End  12528052 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y111B2A.4a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00013730 sql-1 Y111B2A.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y111B2A.4a Y111B2A.4a 3987   III: 12499563-12499688

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:Y111B2A.4a.1 12499557 12528052 1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

18 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon107375   132   III: 12499557-12499688 Caenorhabditis elegans
Exon107378   189   III: 12499798-12499986 Caenorhabditis elegans
Exon107380   300   III: 12501034-12501333 Caenorhabditis elegans
Exon107382   339   III: 12504835-12505173 Caenorhabditis elegans
Exon107384   401   III: 12506133-12506533 Caenorhabditis elegans
Exon107386   200   III: 12509808-12510007 Caenorhabditis elegans
Exon107388   245   III: 12510841-12511085 Caenorhabditis elegans
Exon107391   411   III: 12513154-12513564 Caenorhabditis elegans
Exon107393   163   III: 12515568-12515730 Caenorhabditis elegans
Exon107395   170   III: 12516886-12517055 Caenorhabditis elegans
Exon107397   192   III: 12517104-12517295 Caenorhabditis elegans
Exon107400   378   III: 12519970-12520347 Caenorhabditis elegans
Exon107402   252   III: 12522351-12522602 Caenorhabditis elegans
Exon107404   124   III: 12523752-12523875 Caenorhabditis elegans
Exon107406   185   III: 12524118-12524302 Caenorhabditis elegans
Exon107408   125   III: 12526243-12526367 Caenorhabditis elegans
Exon107410   108   III: 12527117-12527224 Caenorhabditis elegans
Exon107413   312   III: 12527741-12528052 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:Y111B2A.4a.1 12499557 12528052 1

1 Sequence

Length
4226

1 Sequence Ontology Term

Identifier Name Description
transcript