WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00304219 Gene Name  Y49E10.37
Sequence Name  ? Y49E10.37 Organism  Caenorhabditis elegans
Automated Description  Is affected by xbp-1 based on RNA-seq studies. Biotype  SO:0001263
Genetic Position  III:± Length (nt)  ? 245
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00304219

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:Y49E10.37 Y49E10.37 245   III: 12383029-12383273
 

Other

0 CDSs

2 RNAi Result

WormBase ID
WBRNAi00021307
WBRNAi00021496

9 Allele

Public Name
gk963887
gk964363
gk964364
WBVar01272640
WBVar01832578
WBVar01953173
WBVar02101558
WBVar02085554
ttTI35980

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00304219 12383029 12383273 1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

0 Downstream Intergenic Region

4 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in mip-1(uae1) comparing to in N2. DESeq2. Statistically significant genes were chosen based on a BenjaminiHochberg adjusted P-value of 0.05. WBPaper00067885:mip-1(uae1)_upregulated
  Transcripts that showed significantly increased expression in npp-14(ax4543) comparing to in N2. DESeq2. Statistically significant genes were chosen based on a BenjaminiHochberg adjusted P-value of 0.05. WBPaper00067885:npp-14(ax4543)_upregulated
  Transcripts that showed significantly decreased expression in hlh-30(tm1978) animals overexpressing XBP-1s in glia cells, comparing to hlh-30(tm1978) animal controls. DESeq2, fold change > 2, FDR < 0.05. WBPaper00066644:glial-XBP-1s_downregulated_hlh-30(tm1978)
  Transcripts that showed significantly increased expression in N2 animals overexpressing XBP-1s in glia cells, comparing to N2 animal controls. DESeq2, fold change > 2, FDR < 0.05. WBPaper00066644:glial-XBP-1s_upregulated_N2

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00304219 12383029 12383273 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
245

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region