WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00219628 Gene Name  linc-161
Sequence Name  ? Y75B8A.60 Organism  Caenorhabditis elegans
Automated Description  Is affected by ogt-1 and ilc-17.1 based on RNA-seq studies. Biotype  SO:0001641
Genetic Position  III :14.8405± Length (nt)  ? 727
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SummaryGenomicsOther
 
Quick Links:
SummaryGenomicsOther
 
Lists
This Gene is in one list:
metrics_list_union (10192)

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00219628

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:Y75B8A.60 Y75B8A.60 727   III: 12098751-12099477
 

Other

0 CDSs

4 RNAi Result

WormBase ID
WBRNAi00111518
WBRNAi00013521
WBRNAi00111510
WBRNAi00111514

11 Allele

Public Name
gk963887
gk964363
gk964364
gk187582
WBVar01508388
gk766188
gk914182
WBVar01508389
gk316880
tm12711
gk627541

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00219628 12098751 12099477 -1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrIII_12084317..12098750   14434 III: 12084317-12098750 Caenorhabditis elegans

2 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in ogt-1(ok1474) neuronal cells isolated by FACs comparing to in FACs isolated neuronal cells from wild type. DESeq2, fold change > 2, FDR < 0.05. WBPaper00066485:ogt-1(ok1474)_upregulated_neuron
  Transcripts that showed significantly increased expression in ilc-17.1(syb5296) comparing to in N2 animals at L4 larva stage. DESeq2, fold change > 2, FDR < 0.05. WBPaper00066594:ilc-17.1(syb5296)_upregulated

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00219628 12098751 12099477 -1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
727

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

1 Upstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrIII_12099478..12101744   2267 III: 12099478-12101744 Caenorhabditis elegans