WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y47D3A.17a.1 Sequence Name  Y47D3A.17a.1
Length (nt)  2552   Chromosome Location  III: 11257300-11270895
Chromosome . Primary Identifier  III Chromosome Location . Start  11257300
Chromosome Location . End  11270895 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y47D3A.17a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00012930 obr-1 Y47D3A.17 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y47D3A.17a Y47D3A.17a 2301   III: 11257505-11257647

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y47D3A.17a.1 11257300 11270895 -1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

16 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon105279   348   III: 11257300-11257647 Caenorhabditis elegans
Exon105287   98   III: 11258079-11258176 Caenorhabditis elegans
Exon105295   123   III: 11258228-11258350 Caenorhabditis elegans
Exon105303   173   III: 11258396-11258568 Caenorhabditis elegans
Exon105311   318   III: 11258913-11259230 Caenorhabditis elegans
Exon105319   156   III: 11259881-11260036 Caenorhabditis elegans
Exon105327   111   III: 11260133-11260243 Caenorhabditis elegans
Exon105336   229   III: 11260840-11261068 Caenorhabditis elegans
Exon105343   137   III: 11263368-11263504 Caenorhabditis elegans
Exon105350   117   III: 11264366-11264482 Caenorhabditis elegans
Exon105357   89   III: 11265291-11265379 Caenorhabditis elegans
Exon105364   120   III: 11265434-11265553 Caenorhabditis elegans
Exon105371   133   III: 11266214-11266346 Caenorhabditis elegans
Exon105378   73   III: 11266944-11267016 Caenorhabditis elegans
Exon105387   105   III: 11269917-11270021 Caenorhabditis elegans
Exon105391   222   III: 11270674-11270895 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y47D3A.17a.1 11257300 11270895 -1

1 Sequence

Length
2552

1 Sequence Ontology Term

Identifier Name Description
transcript