WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y47D3A.6c.1 Sequence Name  Y47D3A.6c.1
Length (nt)  3207   Chromosome Location  III: 11172092-11193093
Chromosome . Primary Identifier  III Chromosome Location . Start  11172092
Chromosome Location . End  11193093 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y47D3A.6c.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00006604 tra-1 Y47D3A.6 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y47D3A.6c Y47D3A.6c 3207   III: 11172092-11172244

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y47D3A.6c.1 11172092 11193093 -1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

16 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon105171   153   III: 11172092-11172244 Caenorhabditis elegans
Exon105173   149   III: 11172599-11172747 Caenorhabditis elegans
Exon105175   187   III: 11172976-11173162 Caenorhabditis elegans
Exon105177   317   III: 11173548-11173864 Caenorhabditis elegans
Exon105179   402   III: 11174788-11175189 Caenorhabditis elegans
Exon105181   66   III: 11175267-11175332 Caenorhabditis elegans
Exon105183   736   III: 11175465-11176200 Caenorhabditis elegans
Exon105185   63   III: 11177804-11177866 Caenorhabditis elegans
Exon105187   258   III: 11179084-11179341 Caenorhabditis elegans
Exon105189   165   III: 11181097-11181261 Caenorhabditis elegans
Exon105192   168   III: 11182330-11182497 Caenorhabditis elegans
Exon105195   109   III: 11182978-11183086 Caenorhabditis elegans
Exon105198   44   III: 11183148-11183191 Caenorhabditis elegans
Exon105201   221   III: 11183714-11183934 Caenorhabditis elegans
Exon105204   117   III: 11191815-11191931 Caenorhabditis elegans
Exon105205   52   III: 11193042-11193093 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y47D3A.6c.1 11172092 11193093 -1

1 Sequence

Length
3207

1 Sequence Ontology Term

Identifier Name Description
transcript