WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y47D3A.6a.1 Sequence Name  Y47D3A.6a.1
Length (nt)  4673   Chromosome Location  III: 11170890-11195201
Chromosome . Primary Identifier  III Chromosome Location . Start  11170890
Chromosome Location . End  11195201 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y47D3A.6a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00006604 tra-1 Y47D3A.6 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y47D3A.6a Y47D3A.6a 3333   III: 11172092-11172244

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:Y47D3A.6a.1 11170890 11195201 -1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

18 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon105170   1355   III: 11170890-11172244 Caenorhabditis elegans
Exon105172   149   III: 11172599-11172747 Caenorhabditis elegans
Exon105174   187   III: 11172976-11173162 Caenorhabditis elegans
Exon105176   317   III: 11173548-11173864 Caenorhabditis elegans
Exon105178   402   III: 11174788-11175189 Caenorhabditis elegans
Exon105180   66   III: 11175267-11175332 Caenorhabditis elegans
Exon105182   736   III: 11175465-11176200 Caenorhabditis elegans
Exon105184   63   III: 11177804-11177866 Caenorhabditis elegans
Exon105186   258   III: 11179084-11179341 Caenorhabditis elegans
Exon105188   165   III: 11181097-11181261 Caenorhabditis elegans
Exon105191   168   III: 11182330-11182497 Caenorhabditis elegans
Exon105193   109   III: 11182978-11183086 Caenorhabditis elegans
Exon105196   44   III: 11183148-11183191 Caenorhabditis elegans
Exon105199   221   III: 11183714-11183934 Caenorhabditis elegans
Exon105202   117   III: 11191815-11191931 Caenorhabditis elegans
Exon105206   61   III: 11193042-11193102 Caenorhabditis elegans
Exon105208   96   III: 11194865-11194960 Caenorhabditis elegans
Exon105210   159   III: 11195043-11195201 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:Y47D3A.6a.1 11170890 11195201 -1

1 Sequence

Length
4673

1 Sequence Ontology Term

Identifier Name Description
transcript