WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00198642 Gene Name  Y39A1A.28
Sequence Name  ? Y39A1A.28 Organism  Caenorhabditis elegans
Automated Description  Enriched in Q cell based on RNA-seq studies. Is affected by several genes including etr-1; lpd-3; and ilc-17.1 based on RNA-seq studies. Biotype  SO:0001263
Genetic Position  :± Length (nt)  ? 209
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00198642

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:Y39A1A.28 Y39A1A.28 209   III: 10634173-10634381
 

Other

0 CDSs

0 RNAi Result

9 Allele

Public Name
gk964518
gk963887
gk963675
gk963676
gk963216
gk963083
gk703986
WBVar01629568
gk627074

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00198642 10634173 10634381 1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrIII_10634382..10638970   4589 III: 10634382-10638970 Caenorhabditis elegans

5 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in ilc-17.1(syb5296) comparing to in N2 animals at L4 larva stage. DESeq2, fold change > 2, FDR < 0.05. WBPaper00066594:ilc-17.1(syb5296)_upregulated
  Transcripts enriched in Q cell. DESeq2 (version 2.11.40.7) FDR < 0.05, fold change > 2. WBPaper00066652:Q-cell_enriched
  Transcripts that showed significantly increased expression in lpd-3(ok2138) comparing to in N2 animals. DESeq2, fold change > 4, FDR < 0.05. WBPaper00064661:lpd-3(ok2138)_upregulated
  Transcripts of noncoding genes that showed significantly increased expression in muscle. DESeq2 (version 1.24.0). Transcripts with a false-discovery rate adjusted p-value less than 0.05 were considered significantly differentially expressed. WBPaper00062325:muscle_enriched_noncoding-RNA
  Transcripts that showed significantly decreased expression in Q cells isolated from mab-5(e1239) animals, comparing to Q cells isolated from N2 animals. DESeq2 (version 2.11.40.7) FDR < 0.05, log2 fold change > 1.5 or < -1.5. WBPaper00066652:mab-5(e1239)_downregulated_Q-cell

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00198642 10634173 10634381 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
209

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

1 Upstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrIII_10633502..10634172   671 III: 10633502-10634172 Caenorhabditis elegans