WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y39A1A.5b.1 Sequence Name  Y39A1A.5b.1
Length (nt)  1563   Chromosome Location  III: 10605370-10612833
Chromosome . Primary Identifier  III Chromosome Location . Start  10605370
Chromosome Location . End  10612833 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y39A1A.5b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00012644 rabx-5 Y39A1A.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y39A1A.5b Y39A1A.5b 1563   III: 10605370-10605432

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:Y39A1A.5b.1 10605370 10612833 1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

9 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon103722   63   III: 10605370-10605432 Caenorhabditis elegans
Exon103724   116   III: 10605612-10605727 Caenorhabditis elegans
Exon103726   101   III: 10606049-10606149 Caenorhabditis elegans
Exon103728   52   III: 10606244-10606295 Caenorhabditis elegans
Exon103729   557   III: 10610000-10610556 Caenorhabditis elegans
Exon103732   138   III: 10611182-10611319 Caenorhabditis elegans
Exon103734   253   III: 10611631-10611883 Caenorhabditis elegans
Exon103736   82   III: 10612231-10612312 Caenorhabditis elegans
Exon103737   201   III: 10612633-10612833 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:Y39A1A.5b.1 10605370 10612833 1

1 Sequence

Length
1563

1 Sequence Ontology Term

Identifier Name Description
transcript