Genomics
1 Transcripts
| WormMine ID | Sequence Name | Length (nt) | Chromosome Location |
|---|---|---|---|
| Transcript:H04D03.7.1 | H04D03.7.1 |
812
 |
III: 10445581-10446830 |
Other
1 CDSs
| WormMine ID | Sequence Name | Length (nt) | Chromosome Location |
|---|---|---|---|
| CDS:H04D03.7 | H04D03.7 |
450
|
III: 10445805-10446156 |
25 Allele
| Public Name |
|---|
| gk964518 |
| gk963887 |
| gk963675 |
| gk963676 |
| gk963083 |
| WBVar01267797 |
| WBVar01267796 |
| WBVar01542250 |
| WBVar01332821 |
| gk767553 |
| gk374144 |
| gk557158 |
| WBVar01723521 |
| WBVar00216441 |
| WBVar00216437 |
| gk960223 |
| WBVar01409262 |
| WBVar00178625 |
| WBVar00178626 |
| WBVar00237125 |
| WBVar01645960 |
| gk184104 |
| gk184103 |
| gk184102 |
| WBVar00565055 |
1 Chromosome Location
|
Feature . Primary Identifier |
Start | End | Strand |
|---|---|---|---|
| WBGene00305993 | 10445581 | 10446830 | -1 |
1 Downstream Intergenic Region
| WormBase ID | Name | Sequence Name | Length (nt) | Chromosome Location | Organism |
|---|---|---|---|---|---|
| intergenic_region_chrIII_10445355..10445580 | 226 | III: 10445355-10445580 | Caenorhabditis elegans |
4 Expression Clusters
| Regulated By Treatment | Description | Algorithm | Primary Identifier |
|---|---|---|---|
| Bacteria infection: Staphylococcus aureus | Transcripts that showed significantly decreased expression in animals experimentally colonised by a wild microbiota community and infected by the widespread animal pathogen, Staphylococcus aureus, comparing to animals colonized by microbiota but not infected by pathogen. | DeSeq2 (v. 1.42.0), Wald analyses testing against a null hypothesis of < |1.5|-fold change in gene expression between treatments (BenjaminiHochberg adjusted false detection rate of p <= 0.05. | WBPaper00067479:Microbiota-Pathogen_vs_Microbiota_downregulated |
| Transcripts that showed significantly decreased expression in ash-2(RNAi) comparing to in wild type animals injected with vector. | Differential mRNA expression using DESeq2. mRNAs with a FDR < 0.05 and fold change > 2 considered differentially expressed. | WBPaper00066232:ash-2(RNAi)_downregulated_WT | |
| Transcripts that showed significantly increased expression in hsp-3(RNAi) comparing to N2 animals with control vector. | edgeR (v3.19, Bioconductor), p < 0.05, log2FC > 1.5 or < -1.5 | WBPaper00068266:hsp-3(RNAi)_upregulated_N2 | |
| Transcripts that showed significantly increased expression in fic-1(n5823);hsp-3(RNAi) comparing to fic-1(n5823) animals with control vector. | edgeR (v3.19, Bioconductor), p < 0.05, log2FC > 1.5 or < -1.5 | WBPaper00068266:hsp-3(RNAi)_upregulated_fic-1(n5823) |
