WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00196150 Gene Name  C30A5.11
Sequence Name  ? C30A5.11 Organism  Caenorhabditis elegans
Automated Description  Is affected by daf-12 based on RNA-seq studies. Biotype  SO:0001263
Genetic Position  :± Length (nt)  ? 113
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00196150

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:C30A5.11 C30A5.11 113   III: 8216458-8216570
 

Other

0 CDSs

0 RNAi Result

6 Allele

Public Name
gk964518
gk963887
gk962865
WBVar01331506
tm263
gk585140

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00196150 8216458 8216570 1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrIII_8216571..8218218   1648 III: 8216571-8218218 Caenorhabditis elegans

2 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
Bacteria Diet: L. plantarum with pdxH mutant vs. L. plantarum Transcripts that showed significantly decreased expression in N2 animals fed with L. plantarum with pdxH mutant, comparing to in N2 animals fed with L. plantarum. GFold3, logFC < -1 or > 1. WBPaper00066703:L.plantarum-pdxH_downregulated
  Transcripts that showed significantly increased expression in PVD neurons isolated from TV22833 wyIs840(ser2prom3::daf-12a(rh273)::gfpnovo2, Pmyo-2::gfp); wyIs592(ser2prom3::myr-gfp), comparing to in PVD neurons isolated from animals that only expressed wyIs592. Cufflinks 2.2.1 WBPaper00058678:DAF-12_upregulated_PVD

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00196150 8216458 8216570 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
113

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

1 Upstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrIII_8216337..8216457   121 III: 8216337-8216457 Caenorhabditis elegans