WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00200842 Gene Name  C50C3.17
Sequence Name  ? C50C3.17 Organism  Caenorhabditis elegans
Automated Description  Enriched in M3L; RIAL; RMDDL; and neurons based on RNA-seq and single-cell RNA-seq studies. Biotype  SO:0001263
Genetic Position  :± Length (nt)  ? 137
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00200842

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:C50C3.17 C50C3.17 137   III: 8179005-8179141
 

Other

0 CDSs

0 RNAi Result

4 Allele

Public Name
gk964518
gk963887
gk962865
gk439875

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00200842 8179005 8179141 1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrIII_8179142..8179223   82 III: 8179142-8179223 Caenorhabditis elegans

4 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Neuronally enriched transcripts according to a comparison of neuronal nuclei IP samples to total nuclei using isolation of nuclei from tagged specific cell types (INTACT) technology. DESEQ2, fold change > 2 and FDR < 0.01. WBPaper00062103:neuron_enriched
  Single-cell RNA-Seq cell group 52_0 expressed in neuron. scVI 0.6.0 WBPaper00065841:52_0
  Single-cell RNA-Seq cell group 125_0 expressed in neuron. scVI 0.6.0 WBPaper00065841:125_0
  Single-cell RNA-Seq cell group 83_0 expressed in neuron. scVI 0.6.0 WBPaper00065841:83_0

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00200842 8179005 8179141 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
137

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

1 Upstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrIII_8176916..8179004   2089 III: 8176916-8179004 Caenorhabditis elegans