Genomics
1 Transcripts
| WormMine ID | Sequence Name | Length (nt) | Chromosome Location |
|---|---|---|---|
| Transcript:R13A5.17 | R13A5.17 |
412
 |
III: 7543476-7545064 |
Other
29 Allele
| Public Name |
|---|
| gk964518 |
| gk963887 |
| gk963601 |
| tm10530 |
| WBVar00060680 |
| gk410931 |
| gk604175 |
| gk944217 |
| WBVar00065613 |
| gk498546 |
| WBVar00060685 |
| gk876067 |
| gk944216 |
| gk788511 |
| WBVar01645471 |
| gk961123 |
| WBVar01995523 |
| WBVar01408879 |
| WBVar00236643 |
| WBVar01962874 |
| gk696630 |
| gk330562 |
| gk456711 |
| gk178490 |
| WBVar01944691 |
| gk178489 |
| n4571 |
| WBVar02053355 |
| gk178491 |
1 Chromosome Location
|
Feature . Primary Identifier |
Start | End | Strand |
|---|---|---|---|
| WBGene00219719 | 7543476 | 7545064 | -1 |
1 Downstream Intergenic Region
| WormBase ID | Name | Sequence Name | Length (nt) | Chromosome Location | Organism |
|---|---|---|---|---|---|
| intergenic_region_chrIII_7536889..7543475 | 6587 | III: 7536889-7543475 | Caenorhabditis elegans |
5 Expression Clusters
| Regulated By Treatment | Description | Algorithm | Primary Identifier |
|---|---|---|---|
| Transcripts that showed significantly altered expression after 24 hour exposure to stavudine (d4T) starting at L1 lava stage. | DESeq | WBPaper00053302:stavudine_24h_regulated | |
| Transcripts that showed significantly decreased expression in ogt-1(ok1474) neuronal cells isolated by FACs comparing to in FACs isolated neuronal cells from wild type. | DESeq2, fold change > 2, FDR < 0.05. | WBPaper00066485:ogt-1(ok1474)_downregulated_neuron | |
| Bacteria Diet: L. plantarum with pdxH mutant vs. L. plantarum | Transcripts that showed significantly increased expression in N2 animals fed with L. plantarum with pdxH mutant, comparing to in N2 animals fed with L. plantarum. | GFold3, logFC < -1 or > 1. | WBPaper00066703:L.plantarum-pdxH_upregulated |
| Transcripts that showed significantly decreased expression in dpy-21(e428) comparing to in N2 during L3 stage. | DESeq v1.6.3. Fold change > 1.5. | WBPaper00050370:dpy-21(e428)_L3_downregulated | |
| Transcripts of noncoding genes that showed significantly increased expression in muscle. | DESeq2 (version 1.24.0). Transcripts with a false-discovery rate adjusted p-value less than 0.05 were considered significantly differentially expressed. | WBPaper00062325:muscle_enriched_noncoding-RNA |
1 Expression Patterns
| Remark | Reporter Gene | Primary Identifier | Pattern | Subcellular Localization |
|---|---|---|---|---|
| Construct details not specified. | Expr13251 | Further validation by fluorescent reporter showed that the three annotated lincRNAs detected by our muscle profiling (linc-5, linc-55 and linc-57) were muscle-enriched. |
