WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C05D11.2.1 Sequence Name  C05D11.2.1
Length (nt)  2719   Chromosome Location  III: 6433239-6436502
Chromosome . Primary Identifier  III Chromosome Location . Start  6433239
Chromosome Location . End  6436502 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C05D11.2.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00006516 vps-16 C05D11.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C05D11.2 C05D11.2 2559   III: 6433241-6433335

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:C05D11.2.1 6433239 6436502 1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon92342   97   III: 6433239-6433335 Caenorhabditis elegans
Exon92343   86   III: 6433406-6433491 Caenorhabditis elegans
Exon92344   342   III: 6433544-6433885 Caenorhabditis elegans
Exon92345   227   III: 6433935-6434161 Caenorhabditis elegans
Exon92346   185   III: 6434214-6434398 Caenorhabditis elegans
Exon92347   847   III: 6434445-6435291 Caenorhabditis elegans
Exon92348   216   III: 6435337-6435552 Caenorhabditis elegans
Exon92349   221   III: 6435688-6435908 Caenorhabditis elegans
Exon92350   201   III: 6435957-6436157 Caenorhabditis elegans
Exon92351   297   III: 6436206-6436502 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:C05D11.2.1 6433239 6436502 1

1 Sequence

Length
2719

1 Sequence Ontology Term

Identifier Name Description
transcript