WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00014266 Gene Name  C28A5.7
Sequence Name  ? C28A5.7 Organism  Caenorhabditis elegans
Automated Description  Is affected by tdp-1 and mett-10 based on RNA-seq studies. Biotype  SO:0001268
Genetic Position  :± Length (nt)  ? 102
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00014266

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:C28A5.7 C28A5.7 102   III: 4426854-4426955
 

Other

0 CDSs

6 RNAi Result

WormBase ID
WBRNAi00051485
WBRNAi00051486
WBRNAi00018433
WBRNAi00006782
WBRNAi00006930
WBRNAi00029291

3 Allele

Public Name
WBVar02120681
gk317240
gk778000

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00014266 4426854 4426955 -1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

0 Downstream Intergenic Region

3 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Genes that are significantly down regulated in tdp-1(ok803) poly(A) RNA-seq verses in N2. DESeq v1.14, with cut-off p-value < 0.05 and FDR < 0.1. WBPaper00046012:tdp-1(ok803)_downregulated
  Transcripts that showed significantly decreased expression in VC1743[mett-10(ok2204)] comparing to in N2 when animals grow on standard (OP50) plates. DESeq2, p-value < 0.05, fold change > 2. WBPaper00061357:mett-10(ok2204)_downregulated_OP50
  Transcripts that showed significantly decreased expression in VC1743[mett-10(ok2204)] comparing to in N2 when animals grow on peptone-rich (NA22) plates. DESeq2, p-value < 0.05, fold change > 2. WBPaper00061357:mett-10(ok2204)_downregulated_NA22

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00014266 4426854 4426955 -1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
102

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region