WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C48D5.2b.1 Sequence Name  C48D5.2b.1
Length (nt)  2347   Chromosome Location  III: 3599136-3611971
Chromosome . Primary Identifier  III Chromosome Location . Start  3599136
Chromosome Location . End  3611971 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C48D5.2b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004213 ptp-1 C48D5.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C48D5.2b C48D5.2b 1875   III: 3599201-3599334

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:C48D5.2b.1 3599136 3611971 1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon83459   199   III: 3599136-3599334 Caenorhabditis elegans
Exon83461   103   III: 3604815-3604917 Caenorhabditis elegans
Exon83465   184   III: 3607049-3607232 Caenorhabditis elegans
Exon83468   188   III: 3607558-3607745 Caenorhabditis elegans
Exon83471   301   III: 3608124-3608424 Caenorhabditis elegans
Exon83474   229   III: 3608994-3609222 Caenorhabditis elegans
Exon83477   88   III: 3609685-3609772 Caenorhabditis elegans
Exon83480   276   III: 3609824-3610099 Caenorhabditis elegans
Exon83483   285   III: 3610561-3610845 Caenorhabditis elegans
Exon83487   494   III: 3611478-3611971 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:C48D5.2b.1 3599136 3611971 1

1 Sequence

Length
2347

1 Sequence Ontology Term

Identifier Name Description
transcript