WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C48D5.2a.1 Sequence Name  C48D5.2a.1
Length (nt)  3534   Chromosome Location  III: 3590724-3611971
Chromosome . Primary Identifier  III Chromosome Location . Start  3590724
Chromosome Location . End  3611971 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C48D5.2a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004213 ptp-1 C48D5.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C48D5.2a C48D5.2a 3081   III: 3590770-3590907

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C48D5.2a.1 3590724 3611971 1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

17 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon83450   184   III: 3590724-3590907 Caenorhabditis elegans
Exon83451   117   III: 3591624-3591740 Caenorhabditis elegans
Exon83452   217   III: 3591785-3592001 Caenorhabditis elegans
Exon83453   127   III: 3592397-3592523 Caenorhabditis elegans
Exon83454   247   III: 3592604-3592850 Caenorhabditis elegans
Exon83455   227   III: 3593165-3593391 Caenorhabditis elegans
Exon83456   114   III: 3594210-3594323 Caenorhabditis elegans
Exon83457   153   III: 3594440-3594592 Caenorhabditis elegans
Exon83460   103   III: 3604815-3604917 Caenorhabditis elegans
Exon83464   184   III: 3607049-3607232 Caenorhabditis elegans
Exon83467   188   III: 3607558-3607745 Caenorhabditis elegans
Exon83470   301   III: 3608124-3608424 Caenorhabditis elegans
Exon83473   229   III: 3608994-3609222 Caenorhabditis elegans
Exon83476   88   III: 3609685-3609772 Caenorhabditis elegans
Exon83479   276   III: 3609824-3610099 Caenorhabditis elegans
Exon83482   285   III: 3610561-3610845 Caenorhabditis elegans
Exon83486   494   III: 3611478-3611971 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C48D5.2a.1 3590724 3611971 1

1 Sequence

Length
3534

1 Sequence Ontology Term

Identifier Name Description
transcript