WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00305995 Gene Name  H09G03.4
Sequence Name  ? H09G03.4 Organism  Caenorhabditis elegans
Biotype  SO:0001641 Genetic Position  III:±
Length (nt)  ? 1008
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00305995

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:H09G03.4 H09G03.4 332   III: 3228439-3229446
 

Other

0 CDSs

1 RNAi Result

WormBase ID
WBRNAi00016221

19 Allele

Public Name
gk962532
gk964281
WBVar01692317
WBVar01261474
WBVar01261475
WBVar01261471
WBVar01541519
gk954006
WBVar01989914
gk824273
gk599211
gk521686
gk341553
WBVar00044616
WBVar02085360
gk170375
WBVar01913193
gk170374
WBVar01643768

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00305995 3228439 3229446 1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrIII_3229447..3230418   972 III: 3229447-3230418 Caenorhabditis elegans

1 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in skn-1(lax188);daf-2(e1370) comparing to in skn-1(lax188) animals DESeq2, fold change > 2, FDR < 0.05. WBPaper00067765:daf-2(e1370)_upregulated_skn-1(lax188)

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00305995 3228439 3229446 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
1008

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

1 Upstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrIII_3228058..3228438   381 III: 3228058-3228438 Caenorhabditis elegans