WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00305998 Gene Name  R148.8
Sequence Name  ? R148.8 Organism  Caenorhabditis elegans
Automated Description  Is affected by sir-2.1 based on microarray studies. Biotype  SO:0001217
Genetic Position  III:± Length (nt)  ? 662
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00305998

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:R148.8.1 R148.8.1 186   III: 3191495-3192156
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:R148.8 R148.8 186   III: 3191495-3191550

3 RNAi Result

WormBase ID
WBRNAi00017864
WBRNAi00070830
WBRNAi00070831

14 Allele

Public Name
gk962532
gk964281
WBVar01541451
WBVar01541452
gk963379
WBVar02123907
WBVar02124888
gk963914
h10273
gk777475
WBVar01667351
WBVar00054578
WBVar01952026
WBVar01913185

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00305998 3191495 3192156 1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrIII_3192157..3195438   3282 III: 3192157-3195438 Caenorhabditis elegans

2 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Genes found to be regulated by low-copy overexpression of sir-2.1 with p < 0.014. N.A. WBPaper00026929:sir-2.1_overexpression_regulated
  Genome-wide analysis of developmental and sex-regulated gene expression profile. self-organizing map cgc4489_group_5

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00305998 3191495 3192156 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
662

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

1 Upstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrIII_3191308..3191494   187 III: 3191308-3191494 Caenorhabditis elegans