WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y54F10AM.16a.1 Sequence Name  Y54F10AM.16a.1
Length (nt)  2075   Chromosome Location  III: 2530620-2546420
Chromosome . Primary Identifier  III Chromosome Location . Start  2530620
Chromosome Location . End  2546420 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y54F10AM.16a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00306126 cone-1 Y54F10AM.16 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y54F10AM.16a Y54F10AM.16a 1866   III: 2530620-2530670

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y54F10AM.16a.1 2530620 2546420 1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon81469   51   III: 2530620-2530670 Caenorhabditis elegans
Exon81471   111   III: 2530714-2530824 Caenorhabditis elegans
Exon81474   127   III: 2533823-2533949 Caenorhabditis elegans
Exon81477   200   III: 2536399-2536598 Caenorhabditis elegans
Exon81480   261   III: 2537186-2537446 Caenorhabditis elegans
Exon81483   308   III: 2538493-2538800 Caenorhabditis elegans
Exon81486   164   III: 2539300-2539463 Caenorhabditis elegans
Exon81493   116   III: 2543753-2543868 Caenorhabditis elegans
Exon81495   284   III: 2544362-2544645 Caenorhabditis elegans
Exon81497   61   III: 2544835-2544895 Caenorhabditis elegans
Exon81499   81   III: 2545352-2545432 Caenorhabditis elegans
Exon81501   311   III: 2546110-2546420 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y54F10AM.16a.1 2530620 2546420 1

1 Sequence

Length
2075

1 Sequence Ontology Term

Identifier Name Description
transcript