WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y54F10AL.2c.1 Sequence Name  Y54F10AL.2c.1
Length (nt)  3882   Chromosome Location  III: 2473869-2486622
Chromosome . Primary Identifier  III Chromosome Location . Start  2473869
Chromosome Location . End  2486622 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y54F10AL.2c.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004884 smg-6 Y54F10AL.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y54F10AL.2c Y54F10AL.2c 3660   III: 2473881-2474240

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:Y54F10AL.2c.1 2473869 2486622 1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

17 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon81367   372   III: 2473869-2474240 Caenorhabditis elegans
Exon81371   156   III: 2475342-2475497 Caenorhabditis elegans
Exon81374   817   III: 2476110-2476926 Caenorhabditis elegans
Exon81376   49   III: 2477605-2477653 Caenorhabditis elegans
Exon81379   91   III: 2478031-2478121 Caenorhabditis elegans
Exon81381   80   III: 2478173-2478252 Caenorhabditis elegans
Exon81383   103   III: 2478312-2478414 Caenorhabditis elegans
Exon81385   255   III: 2478851-2479105 Caenorhabditis elegans
Exon81388   101   III: 2479489-2479589 Caenorhabditis elegans
Exon81391   79   III: 2479961-2480039 Caenorhabditis elegans
Exon81394   201   III: 2481898-2482098 Caenorhabditis elegans
Exon81397   179   III: 2482737-2482915 Caenorhabditis elegans
Exon81399   128   III: 2482993-2483120 Caenorhabditis elegans
Exon81401   518   III: 2483769-2484286 Caenorhabditis elegans
Exon81403   121   III: 2484941-2485061 Caenorhabditis elegans
Exon81405   224   III: 2485451-2485674 Caenorhabditis elegans
Exon81406   408   III: 2486215-2486622 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:Y54F10AL.2c.1 2473869 2486622 1

1 Sequence

Length
3882

1 Sequence Ontology Term

Identifier Name Description
transcript