WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y39A3B.5d.1 Sequence Name  Y39A3B.5d.1
Length (nt)  1719   Chromosome Location  III: 2009299-2021595
Chromosome . Primary Identifier  III Chromosome Location . Start  2009299
Chromosome Location . End  2021595 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y39A3B.5d.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00021439 ckr-2 Y39A3B.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y39A3B.5d Y39A3B.5d 1521   III: 2009481-2009543

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y39A3B.5d.1 2009299 2021595 -1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

13 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon80633   245   III: 2009299-2009543 Caenorhabditis elegans
Exon80640   109   III: 2010635-2010743 Caenorhabditis elegans
Exon80645   68   III: 2011044-2011111 Caenorhabditis elegans
Exon80649   171   III: 2011261-2011431 Caenorhabditis elegans
Exon80654   91   III: 2012422-2012512 Caenorhabditis elegans
Exon80659   117   III: 2012569-2012685 Caenorhabditis elegans
Exon80664   88   III: 2012738-2012825 Caenorhabditis elegans
Exon80669   142   III: 2013701-2013842 Caenorhabditis elegans
Exon80674   151   III: 2014558-2014708 Caenorhabditis elegans
Exon80679   100   III: 2015131-2015230 Caenorhabditis elegans
Exon80684   160   III: 2015451-2015610 Caenorhabditis elegans
Exon80690   148   III: 2015885-2016032 Caenorhabditis elegans
Exon80695   129   III: 2021467-2021595 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y39A3B.5d.1 2009299 2021595 -1

1 Sequence

Length
1719

1 Sequence Ontology Term

Identifier Name Description
transcript