Genomics
1 Transcripts
| WormMine ID | Sequence Name | Length (nt) | Chromosome Location |
|---|---|---|---|
| Transcript:Y82E9BR.27 | Y82E9BR.27 |
217
 |
III: 1418845-1419061 |
Other
21 Allele
| Public Name |
|---|
| gk963623 |
| gk962532 |
| gk964281 |
| gk964019 |
| gk964018 |
| WBVar01324497 |
| WBVar01324496 |
| WBVar01324498 |
| WBVar01578421 |
| WBVar01256942 |
| gk166627 |
| WBVar00019456 |
| WBVar01401177 |
| WBVar00019461 |
| gk540683 |
| WBVar00019466 |
| WBVar00560295 |
| tm7313 |
| WBVar00560296 |
| WBVar00038643 |
| WBVar00038648 |
1 Chromosome Location
|
Feature . Primary Identifier |
Start | End | Strand |
|---|---|---|---|
| WBGene00195737 | 1418845 | 1419061 | 1 |
1 Downstream Intergenic Region
| WormBase ID | Name | Sequence Name | Length (nt) | Chromosome Location | Organism |
|---|---|---|---|---|---|
| intergenic_region_chrIII_1419062..1419195 | 134 | III: 1419062-1419195 | Caenorhabditis elegans |
5 Expression Clusters
| Regulated By Treatment | Description | Algorithm | Primary Identifier |
|---|---|---|---|
| Transcripts that showed significantly increased expression in ilc-17.1(syb5296) comparing to in N2 animals at L4 larva stage. | DESeq2, fold change > 2, FDR < 0.05. | WBPaper00066594:ilc-17.1(syb5296)_upregulated | |
| Fungi infection: Fusarium oxysporum | Transcripts that showed significantly altered expression after infected by fungi Fusarium oxysporum from 0 t0 48 hours. | The Benjamini and Hochberg approach was used to adjust the resulting P-values for controlling the false-discovery rate. The transcripts having a false-discovery rate of < 0.05 were considered as differentially expressed. | WBPaper00053368:F.oxysporum_regulated |
| ncRNAs with significantly decreased expression in cep-1(gk138) than in N2 after UV irradiation, according to RNAseq. | ncRNAs with more than 2 fold difference in expression are considered differentially expressed | WBPaper00045380:cep-1(gk138)_downregulated_UV | |
| ncRNAs with significantly increased expression in cep-1(gk138) than in N2 under normal conditions, according to RNAseq. | ncRNAs with more than 2 fold difference in expression are considered differentially expressed | WBPaper00045380:cep-1(gk138)_upregulated_normal | |
| Promoters regions that bind with NHR-86 according to ChIP-Seq using NHR-86-GFP protein. | N.A. | WBPaper00056073:NHR-86_interacting_promoter |
1 Upstream Intergenic Region
| WormBase ID | Name | Sequence Name | Length (nt) | Chromosome Location | Organism |
|---|---|---|---|---|---|
| intergenic_region_chrIII_1417191..1418844 | 1654 | III: 1417191-1418844 | Caenorhabditis elegans |
