Genomics
1 Transcripts
| WormMine ID | Sequence Name | Length (nt) | Chromosome Location |
|---|---|---|---|
| Transcript:Y119D3B.24 | Y119D3B.24 |
87
 |
III: 1218366-1218452 |
Other
11 Allele
| Public Name |
|---|
| gk963623 |
| gk962532 |
| gk964281 |
| gk964018 |
| WBVar02120666 |
| gk5472 |
| WBVar02120986 |
| gk963913 |
| gk843870 |
| WBVar01917963 |
| gk784594 |
1 Chromosome Location
|
Feature . Primary Identifier |
Start | End | Strand |
|---|---|---|---|
| WBGene00198758 | 1218366 | 1218452 | 1 |
2 Expression Clusters
| Regulated By Treatment | Description | Algorithm | Primary Identifier |
|---|---|---|---|
| Bacteria: E.faecalis strain OG1RF | Transcripts that showed significantly increased expression after infection by E. faecalis OG1RF. | Ballgown was used to calculate differential expression of genes using FPKM data and to generate tables with fold change and P values. Genes were shortlisted with a cutoff of 2-fold change and P values of less than 0.05. | WBPaper00059754:E.faecalis_OG1RF_upregulated |
| Small RNAs (less than 200 bases long) that showed significantly increased expression in rpc-1(RNAi) animals. | DESeq2, fold change > 2, FDR < 0.05. | WBPaper00067416:rpc-1(RNAi)_upregulated_smallRNA |
