WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00044056 Gene Name  Y53F4B.40
Sequence Name  ? Y53F4B.40 Organism  Caenorhabditis elegans
Automated Description  Is affected by several genes including mut-16; meg-4; and meg-3 based on RNA-seq studies. Biotype  SO:0000336
Genetic Position  :± Length (nt)  ? 1162
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00044056

Genomics

0 Transcripts

 

Other

0 CDSs

0 RNAi Result

35 Allele

Public Name
gk963801
gk963053
WBVar01321536
WBVar01321537
WBVar01321540
WBVar01321541
WBVar01321542
WBVar01321543
WBVar01321544
gk962684
gk963297
cxTi9268
WBVar01696650
WBVar02124340
WBVar02120969
WBVar02120663
WBVar01950754
WBVar01950753
gk163076
WBVar01950752
WBVar01395482
WBVar02012429
WBVar01994571
WBVar01254064
WBVar01254061
WBVar01254062
WBVar01898609
WBVar01401015
WBVar01407135
gk388670

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00044056 14980957 14982118 -1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrII_14977006..14980956   3951 II: 14977006-14980956 Caenorhabditis elegans

3 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in mut-16(pk710), comparing to in N2 animals. DESeq2 v. 1.22.2, adjusted p-value <= 0.05. WBPaper00059605:mut-16(pk710)_upregulated
  Targets of endo-siRNA that showed significantly increased expression in BFF40[meg-3(tm4259);meg-4(ax2026);mex-5::gfp::h2b::tbb-2] comparing to in SX1263[Pmex-5::gfp::h2b::tbb-2 (mjIs134 II)] dissected gonad isolated from 1-day old adult hermaphrodites. DESeq2, fold change > 2, FDR < 0.01 WBPaper00057140:meg-3(tm4259)_meg-4(ax2026)_upregulated
  Transcripts that showed significantly decreased expression in adr-1(tm668) comparing to in N2. DESeq2, p-value < 0.05 and a fold enrichment log2fold > 0.5. WBPaper00055226:adr-1(tm668)_downregulated

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00044056 14980957 14982118 -1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
1162

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

1 Upstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrII_14982119..14982591   473 II: 14982119-14982591 Caenorhabditis elegans