WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00014283 Gene Name  C38C6.t1
Sequence Name  ? C38C6.t1 Organism  Caenorhabditis elegans
Automated Description  Is affected by rpc-1 based on RNA-seq studies. Biotype  SO:0001272
Genetic Position  :± Length (nt)  ? 82
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00014283

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:C38C6.t1 C38C6.t1 82   II: 14635335-14635416
 

Other

0 CDSs

2 RNAi Result

WormBase ID
WBRNAi00042149
WBRNAi00011751

3 Allele

Public Name
gk963801
gk963053
gk962684

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00014283 14635335 14635416 -1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

0 Downstream Intergenic Region

2 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts depleted in purified oocyte P bodies comparing to in the whole animal. DESeq2, FDR < 0.05, fold change > 2. WBPaper00065975:P-body_vs_WholeAnimal_depleted
  Small RNAs (less than 200 bases long) that showed significantly decreased expression in rpc-1(RNAi) animals. DESeq2, fold change > 2, FDR < 0.05. WBPaper00067416:rpc-1(RNAi)_downregulated_smallRNA

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00014283 14635335 14635416 -1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
82

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region