WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00219620 Gene Name  linc-74
Sequence Name  ? Y48B6A.24 Organism  Caenorhabditis elegans
Automated Description  Is affected by ints-4 based on RNA-seq studies. Biotype  SO:0001641
Genetic Position  II :22.8775± Length (nt)  ? 1572
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SummaryGenomicsOther
 
Quick Links:
SummaryGenomicsOther
 
Lists
This Gene is in one list:
metrics_list_union (10192)

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00219620

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:Y48B6A.24 Y48B6A.24 791   II: 14218808-14220379
 

Other

0 CDSs

1 RNAi Result

WormBase ID
WBRNAi00009352

46 Allele

Public Name
gk963801
gk963053
gk962684
WBVar02068426
WBVar01265762
gk393368
gk809706
gk830112
gk685518
gk806077
gk739462
gk664601
gk747963
gk809039
gk522235
gk873496
gk775934
gk645251
gk747962
gk402816
gk515343
gk747964
WBVar00013628
WBVar01994466
WBVar00013633
WBVar01944151
WBVar02029640
h16295
WBVar01319604
WBVar01252723

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00219620 14218808 14220379 1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrII_14220380..14220938   559 II: 14220380-14220938 Caenorhabditis elegans

3 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in 10-days post L4 adult hermaphrodite N2 grown at 20C, comparing to in 1-day post L4 adult hermaphrodite N2 animals grown at 20C. CuffDiff, fold change > 2. WBPaper00065096:Day10_vs_Day1_upregulated
Bacteria infection: Bacillus thuringiensis Transcripts that showed significantly decreased expression in N2 animals infected by bacteria BMB171/Cry5Ba, an acrystalliferous Bt mutant BMB171 transformed with toxin gene cry5Ba on the shuttle vector pHT304, comparing to N2 animals infected by BMB171/pHT304. N.A. WBPaper00064229:B.thuringiensis-Cry5Ba_downregulated
  Transcripts that showed significantly increased expression in ints-4(RNAi) animals treated with 300uM CdCl2 from L1 to late L3 larva stage, comparing to control RNAi animals with the same Cadmium treatment. DESeq2, v1.12.0, fold change > 2, FDR < 0.05 WBPaper00057068:ints-4(RNAi)_upregulated_Cadmium

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00219620 14218808 14220379 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
1572

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

1 Upstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrII_14218065..14218807   743 II: 14218065-14218807 Caenorhabditis elegans