WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00014885 Gene Name  Y39G8B.8
Sequence Name  ? Y39G8B.8 Organism  Caenorhabditis elegans
Automated Description  Is affected by vhl-1; ints-5; and sir-2.1 based on microarray and RNA-seq studies. Is affected by resveratrol based on microarray studies. Biotype  SO:0000336
Genetic Position  :± Length (nt)  ? 519
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00014885

Genomics

0 Transcripts

 

Other

0 CDSs

0 RNAi Result

23 Allele

Public Name
gk963801
gk963053
WBVar02124685
WBVar02123501
WBVar02123373
WBVar02121398
gk962684
WBVar02123203
WBVar02120964
gk319114
WBVar01721372
gk955501
WBVar01406827
gk160850
WBVar01895643
WBVar01562739
WBVar01562738
WBVar00231921
WBVar01252065
WBVar00235091
WBVar01318822
WBVar01318821
ttTi27715

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00014885 13993009 13993527 -1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrII_13991842..13993008   1167 II: 13991842-13993008 Caenorhabditis elegans

5 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Genes found to be regulated by low-copy overexpression of sir-2.1 with p < 0.014. N.A. WBPaper00026929:sir-2.1_overexpression_regulated
  Transcripts that showed significantly increased expression in ints-5(RNAi) comparing to in N2. DESeq2 and edgeR. WBPaper00056284:ints-5(RNAi)_upregulated
  Genes found to be regulated in daf-16(mgDf50) by resveratrol treatment with p < 0.01. N.A. WBPaper00026929:Resveratrol_regulated_daf-16
  Genome-wide analysis of developmental and sex-regulated gene expression profile. self-organizing map cgc4489_group_15
  Upregulated genes in the hif-1; vhl-1 versus hif-1 Microarray Comparisons.   WBPaper00024375:Up_vhl-1_vs_hif-1_vhl-1

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00014885 13993009 13993527 -1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
519

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

1 Upstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrII_13993528..13994409   882 II: 13993528-13994409 Caenorhabditis elegans