WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00194807 Gene Name  mir-2215
Sequence Name  ? Y48C3A.21 Organism  Caenorhabditis elegans
Automated Description  Is affected by alg-5 based on RNA-seq studies. Is affected by nicotine based on quantitative PCR studies. Biotype  SO:0001265
Genetic Position  II :16.635± Length (nt)  ? 65
Paste the following link
Quick Links:
SummaryGenomicsOther
 
Quick Links:
SummaryGenomicsOther
 
Lists
This Gene isn't in any lists. Upload a list.

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00194807

Genomics

2 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:Y48C3A.21b Y48C3A.21b 22   II: 13333763-13333784
Transcript:Y48C3A.21a Y48C3A.21a 22   II: 13333806-13333827
 

Other

0 CDSs

0 RNAi Result

10 Allele

Public Name
gk963801
gk963053
gk962684
gk962526
gk962527
WBVar02014403
tm11010
WBVar02077338
WBVar01642410
WBVar00005878

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00194807 13333763 13333827 -1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrII_13330526..13333762   3237 II: 13330526-13333762 Caenorhabditis elegans

3 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  MicroRNAs that showed significantly decreased expression in alg-5(ram2), comparing to in N2. DESeq2, Fold change > 1.5. WBPaper00051404:alg-5(ram2)_downregulated_miRNA
  miRNA that showed increased expression after 20mM nicotine treatment Statistical analysis was based on t-test for independent samples via SPSS. The results were further narrowed based on two criteria. Only the genes whose expression changed with a P < 0.05 and a fold change > 0.5, when compared to control, were considered as differentially expressed. Fold change was calculated as 2**(DeltaCt(treatment)-DeltaCt(control))-1. DeltaCt = Ct(miRNA)-Ct(aveMRNA). WBPaper00042480:20mM_nicotine_upregulated
  MicroRNAs that showed significantly decreased expression in alg-5(tm1163), comparing to in N2. DESeq2, Fold change > 1.5. WBPaper00051404:alg-5(tm1163)_downregulated_miRNA

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00194807 13333763 13333827 -1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
65

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

1 Upstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrII_13333828..13338280   4453 II: 13333828-13338280 Caenorhabditis elegans