WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00305159 Gene Name  Y38E10A.35
Sequence Name  ? Y38E10A.35 Organism  Caenorhabditis elegans
Automated Description  Is affected by sir-2.1 based on microarray studies. Is affected by Atrazine based on microarray studies. Biotype  SO:0001217
Genetic Position  II:± Length (nt)  ? 1289
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SummaryGenomicsOther
 
Quick Links:
SummaryGenomicsOther
 
Lists
This Gene is in one list:
metrics_list_union (10192)

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00305159

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:Y38E10A.35.1 Y38E10A.35.1 765   II: 12571572-12572860
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y38E10A.35 Y38E10A.35 432   II: 12571949-12571974

6 RNAi Result

WormBase ID
WBRNAi00056019
WBRNAi00020273
WBRNAi00023347
WBRNAi00023860
WBRNAi00024147
WBRNAi00024218

55 Allele

Public Name
gk963801
gk963053
gk962684
gk964116
gk964188
WBVar02068279
gk964189
WBVar02121384
WBVar02123665
WBVar02029435
otn14802
WBVar01983067
WBVar02124098
tm5772
WBVar00602126
WBVar01892399
WBVar01892398
WBVar01892397
WBVar01892410
WBVar01892408
WBVar01892407
WBVar01892406
WBVar01892405
WBVar01892409
WBVar01892400
WBVar01892404
WBVar01892403
WBVar01892402
WBVar01892401
WBVar01248043

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00305159 12571572 12572860 -1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrII_12570624..12571571   948 II: 12570624-12571571 Caenorhabditis elegans

4 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Genes found to be regulated by low-copy overexpression of sir-2.1 with p < 0.014. N.A. WBPaper00026929:sir-2.1_overexpression_regulated
UVC-EtBr-exposed(exposed to 7.5 J/m2 UVC radiation 3 times, 24 h apart (48 h total) and exposed to EtBr (5ug/mL in agar).) vs UVC-exposed(exposed to 7.5 J/m2 UVC radiation 3 times, 24 h apart (48 h total).) at just prior to the third UVC dose (48h). Genes differentially expressed under EtBr treatment and UVC exposure vs under UVC exposure but without EtBr treatment at the -1h timepoint (just prior to the third UVC dose (48h)). Transcripts were defined as fold-change >1.2, p < 0.05 based on Rosetta Resolver analysis for all pairwise treatment comparisons. The fold-change refers to the second intensity over the first. WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_48h
  Genes that showed significant differential expressed between control and 150 mg\/L Atrazine treatment. t-test, p < 0.05. WBPaper00036123:Atrazine_regulated
  Genome-wide analysis of developmental and sex-regulated gene expression profile. self-organizing map cgc4489_group_13

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00305159 12571572 12572860 -1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
1289

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

1 Upstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrII_12572861..12573047   187 II: 12572861-12573047 Caenorhabditis elegans