WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00219567 Gene Name  linc-164
Sequence Name  ? C44C11.8 Organism  Caenorhabditis elegans
Automated Description  Enriched in M3L based on single-cell RNA-seq studies. Is affected by adr-1 based on RNA-seq studies. Biotype  SO:0001641
Genetic Position  II :9.67324± Length (nt)  ? 2951
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00219567

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:C44C11.8 C44C11.8 1739   II: 12352959-12355909
 

Other

0 CDSs

0 RNAi Result

92 Allele

Public Name
gk963801
gk963053
gk962684
gk964116
tm13006
gk157070
gk513615
WBVar02067102
WBVar02067103
WBVar01605502
WBVar01605503
WBVar01605504
WBVar01605505
WBVar01605501
WBVar01605506
gk484985
gk349632
gk555534
gk863283
gk607626
gk387819
gk644227
WBVar01383888
gk646104
gk852827
gk378273
gk640314
gk655260
gk333215
gk481951

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00219567 12352959 12355909 -1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrII_12352226..12352958   733 II: 12352226-12352958 Caenorhabditis elegans

6 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in exos-8(RNAi) animals. fold change > 2, FDR < 0.05 WBPaper00068292:exos-8(RNAi)_upregulated
Bacteria: Pseudomonas donghuensis HYS Transcripts that showed significantly increased expression after 24 hours of infection by Pseudomonas donghuensis HYS, comparing to control animals exposed to OP50. DESeq2, fold change > 2, FDR < 0.05. WBPaper00068216:HYS_vs_OP50_upregulated
Wounding: 2 hours after a single stab of a microinjection needle to either anterior or posterior body of lateral hyp7 (avoid the gonad) 24 hr after the L4 stage. Transcripts that showed significantly increased expression 2 hours after animals had a single stab of a microinjection needle to either anterior or posterior body of lateral hyp7 (avoid the gonad) 24 hr after the L4 stage. The cutoff for differential expressed genes (DEGs) were: Benjamini-Hochberg adjustedP-valueless than 0.05 and fold change larger than 1.5. WBPaper00059987:Wounding_upregulated
Bacteria: Pseudomonas donghuensis HYS Transcripts that showed significantly decreased expression after 24 hours of infection by Pseudomonas donghuensis HYS with deletion of ferric uptake regulator (FUR), comparing to control animals exposed to HYS. DESeq2, fold change > 2, FDR < 0.05. WBPaper00068216:FUR_vs_HYS_downregulated
  Transcripts that showed significantly increased expression in adr-1(tm668) comparing to in N2. DESeq2, p-value < 0.05 and a fold enrichment log2fold > 0.5. WBPaper00055226:adr-1(tm668)_upregulated
  Single-cell RNA-Seq cell group 125_0 expressed in neuron. scVI 0.6.0 WBPaper00065841:125_0

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00219567 12352959 12355909 -1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
2951

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

1 Upstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrII_12355910..12358691   2782 II: 12355910-12358691 Caenorhabditis elegans