WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00045127 Gene Name  W03C9.9
Sequence Name  ? W03C9.9 Organism  Caenorhabditis elegans
Automated Description  Is affected by skn-1 and ilc-17.1 based on RNA-seq studies. Biotype  SO:0001267
Genetic Position  :± Length (nt)  ? 62
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00045127

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:W03C9.9 W03C9.9 62   II: 11960898-11960959
 

Other

0 CDSs

1 RNAi Result

WormBase ID
WBRNAi00022458

4 Allele

Public Name
gk963801
gk963053
gk962684
gk963539

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00045127 11960898 11960959 1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrII_11960960..11960989   30 II: 11960960-11960989 Caenorhabditis elegans

4 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts depleted in purified oocyte P bodies comparing to in whole oocytes. DESeq2, FDR < 0.05, fold change > 2. WBPaper00065975:P-body_vs_oocyte_depleted
  Transcripts depleted in purified oocyte P bodies comparing to in the whole animal. DESeq2, FDR < 0.05, fold change > 2. WBPaper00065975:P-body_vs_WholeAnimal_depleted
  Transcripts that showed significantly increased expression in ilc-17.1(syb5296) comparing to in N2 animals at L4 larva stage. DESeq2, fold change > 2, FDR < 0.05. WBPaper00066594:ilc-17.1(syb5296)_upregulated
  Transcripts that showed significantly altered expression in skn-1gf(lax188) comparing to in WT animals in ASI neuron. DESeq2, p-value < 0.05. WBPaper00066256:skn-1gf(lax188)_regulated

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00045127 11960898 11960959 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
62

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

1 Upstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrII_11960740..11960897   158 II: 11960740-11960897 Caenorhabditis elegans