WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00007539 Gene Name  B0334.12
Sequence Name  ? B0334.12 Organism  Caenorhabditis elegans
Automated Description  Is affected by hda-6; ptl-1; and ilc-17.1 based on RNA-seq studies. Biotype  SO:0001267
Genetic Position  :± Length (nt)  ? 70
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00007539

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:B0334.12 B0334.12 70   II: 11484683-11484752
 

Other

0 CDSs

1 RNAi Result

WormBase ID
WBRNAi00038927

5 Allele

Public Name
gk963801
gk963053
gk962684
gk963539
gk963482

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00007539 11484683 11484752 1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

0 Downstream Intergenic Region

5 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in ilc-17.1(syb5296) comparing to in N2 animals at L4 larva stage. DESeq2, fold change > 2, FDR < 0.05. WBPaper00066594:ilc-17.1(syb5296)_upregulated
  Transcripts that showed significantly increased expression in ptl-1(ok621) comparing to in N2 DESeq2 1.14.1, fold change > 1.5, p-value < 0.01. WBPaper00056039:ptl-1(ok621)_upregulated
  Transcripts that showed significantly increased expression in hda-6(ok3203) comparing to in N2 DESeq2 1.14.1, fold change > 1.5, p-value < 0.01. WBPaper00056039:hda-6(ok3203)_upregulated
  Proteins interacting with mKate-IFE-1 via LC-MS-MS. fold change > 2, FDR < 0.05 WBPaper00067908:IFE-1_interacting
  Proteins interacting with GFP-IFE-3 via LC-MS-MS. fold change > 2, FDR < 0.05 WBPaper00067908:IFE-3_interacting

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00007539 11484683 11484752 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
70

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region