WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00219774 Gene Name  F33A8.12
Sequence Name  ? F33A8.12 Organism  Caenorhabditis elegans
Automated Description  Enriched in AIBL and neurons based on RNA-seq and single-cell RNA-seq studies. Is affected by set-2 based on RNA-seq studies. Biotype  SO:0001263
Genetic Position  :± Length (nt)  ? 870
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00219774

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:F33A8.12 F33A8.12 658   II: 11030631-11031500
 

Other

0 CDSs

0 RNAi Result

19 Allele

Public Name
gk963801
gk963053
otn10896
gk962682
otn2804
otn2805
WBVar02040539
WBVar02108827
otn19491
gk747439
gk869621
gk430925
gk679909
otn1445
gk322590
gk343481
gk154272
gk154274
gk154273

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00219774 11030631 11031500 1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrII_11031501..11032202   702 II: 11031501-11032202 Caenorhabditis elegans

3 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Neuronally enriched transcripts according to a comparison of neuronal nuclei IP samples to total nuclei using isolation of nuclei from tagged specific cell types (INTACT) technology. DESEQ2, fold change > 2 and FDR < 0.01. WBPaper00062103:neuron_enriched
  Transcripts that showed significantly increased expression in set-2(tm1630) animals at embryo stage, comparing to in N2 animals. DESeq2 (v2.1.8.3) was used to determine DE genes and to generate principal component and scatter plots. DE genes with FDR < 0.05 were analysed using g:Profiler with Bonferroni correction. WBPaper00060014:set-2(tm1630)_upregulated
  Single-cell RNA-Seq cell group 97_0 expressed in neuron. scVI 0.6.0 WBPaper00065841:97_0

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00219774 11030631 11031500 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
870

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

1 Upstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrII_11030398..11030630   233 II: 11030398-11030630 Caenorhabditis elegans