WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C09D8.1j.1 Sequence Name  C09D8.1j.1
Length (nt)  6747   Chromosome Location  II: 10975569-11011782
Chromosome . Primary Identifier  II Chromosome Location . Start  10975569
Chromosome Location . End  11011782 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C09D8.1j.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004215 ptp-3 C09D8.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C09D8.1j C09D8.1j 6747   II: 10975569-10975836

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:C09D8.1j.1 10975569 11011782 1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

29 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon67571   268   II: 10975569-10975836 Caenorhabditis elegans
Exon67575   142   II: 10976186-10976327 Caenorhabditis elegans
Exon67581   241   II: 10976373-10976613 Caenorhabditis elegans
Exon67587   214   II: 10977017-10977230 Caenorhabditis elegans
Exon67601   135   II: 10983267-10983401 Caenorhabditis elegans
Exon67611   141   II: 10983794-10983934 Caenorhabditis elegans
Exon67621   124   II: 10983998-10984121 Caenorhabditis elegans
Exon67628   72   II: 10984202-10984273 Caenorhabditis elegans
Exon67636   85   II: 10984385-10984469 Caenorhabditis elegans
Exon67646   246   II: 10984517-10984762 Caenorhabditis elegans
Exon67656   142   II: 10985022-10985163 Caenorhabditis elegans
Exon67666   208   II: 10985213-10985420 Caenorhabditis elegans
Exon67676   71   II: 10985485-10985555 Caenorhabditis elegans
Exon67686   360   II: 10985677-10986036 Caenorhabditis elegans
Exon67707   50   II: 10993895-10993944 Caenorhabditis elegans
Exon67718   265   II: 10994145-10994409 Caenorhabditis elegans
Exon67729   213   II: 10995024-10995236 Caenorhabditis elegans
Exon67740   143   II: 10995310-10995452 Caenorhabditis elegans
Exon67751   111   II: 10996164-10996274 Caenorhabditis elegans
Exon67763   133   II: 10998998-10999130 Caenorhabditis elegans
Exon67779   86   II: 11006751-11006836 Caenorhabditis elegans
Exon67792   177   II: 11007016-11007192 Caenorhabditis elegans
Exon67807   516   II: 11007310-11007825 Caenorhabditis elegans
Exon67821   276   II: 11007889-11008164 Caenorhabditis elegans
Exon67835   99   II: 11009181-11009279 Caenorhabditis elegans
Exon67849   1619   II: 11009368-11010986 Caenorhabditis elegans
Exon67863   253   II: 11011040-11011292 Caenorhabditis elegans
Exon67877   246   II: 11011373-11011618 Caenorhabditis elegans
Exon67886   111   II: 11011672-11011782 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:C09D8.1j.1 10975569 11011782 1

1 Sequence

Length
6747

1 Sequence Ontology Term

Identifier Name Description
transcript