WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C09D8.1f.1 Sequence Name  C09D8.1f.1
Length (nt)  6615   Chromosome Location  II: 10975539-11011782
Chromosome . Primary Identifier  II Chromosome Location . Start  10975539
Chromosome Location . End  11011782 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C09D8.1f.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004215 ptp-3 C09D8.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C09D8.1f C09D8.1f 6615   II: 10975539-10975674

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C09D8.1f.1 10975539 11011782 1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

29 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon67568   136   II: 10975539-10975674 Caenorhabditis elegans
Exon67573   142   II: 10976186-10976327 Caenorhabditis elegans
Exon67579   241   II: 10976373-10976613 Caenorhabditis elegans
Exon67585   214   II: 10977017-10977230 Caenorhabditis elegans
Exon67599   135   II: 10983267-10983401 Caenorhabditis elegans
Exon67609   141   II: 10983794-10983934 Caenorhabditis elegans
Exon67619   124   II: 10983998-10984121 Caenorhabditis elegans
Exon67627   72   II: 10984202-10984273 Caenorhabditis elegans
Exon67634   85   II: 10984385-10984469 Caenorhabditis elegans
Exon67644   246   II: 10984517-10984762 Caenorhabditis elegans
Exon67654   142   II: 10985022-10985163 Caenorhabditis elegans
Exon67664   208   II: 10985213-10985420 Caenorhabditis elegans
Exon67674   71   II: 10985485-10985555 Caenorhabditis elegans
Exon67684   360   II: 10985677-10986036 Caenorhabditis elegans
Exon67705   50   II: 10993895-10993944 Caenorhabditis elegans
Exon67716   265   II: 10994145-10994409 Caenorhabditis elegans
Exon67727   213   II: 10995024-10995236 Caenorhabditis elegans
Exon67738   143   II: 10995310-10995452 Caenorhabditis elegans
Exon67749   111   II: 10996164-10996274 Caenorhabditis elegans
Exon67761   133   II: 10998998-10999130 Caenorhabditis elegans
Exon67776   86   II: 11006751-11006836 Caenorhabditis elegans
Exon67789   177   II: 11007016-11007192 Caenorhabditis elegans
Exon67803   516   II: 11007310-11007825 Caenorhabditis elegans
Exon67817   276   II: 11007889-11008164 Caenorhabditis elegans
Exon67831   99   II: 11009181-11009279 Caenorhabditis elegans
Exon67845   1619   II: 11009368-11010986 Caenorhabditis elegans
Exon67859   253   II: 11011040-11011292 Caenorhabditis elegans
Exon67873   246   II: 11011373-11011618 Caenorhabditis elegans
Exon67883   111   II: 11011672-11011782 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C09D8.1f.1 10975539 11011782 1

1 Sequence

Length
6615

1 Sequence Ontology Term

Identifier Name Description
transcript