WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C09D8.1k.1 Sequence Name  C09D8.1k.1
Length (nt)  6213   Chromosome Location  II: 10975539-11011782
Chromosome . Primary Identifier  II Chromosome Location . Start  10975539
Chromosome Location . End  11011782 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C09D8.1k.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004215 ptp-3 C09D8.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C09D8.1k C09D8.1k 6213   II: 10975539-10975674

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:C09D8.1k.1 10975539 11011782 1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

28 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon67566   136   II: 10975539-10975674 Caenorhabditis elegans
Exon67576   142   II: 10976186-10976327 Caenorhabditis elegans
Exon67582   241   II: 10976373-10976613 Caenorhabditis elegans
Exon67588   214   II: 10977017-10977230 Caenorhabditis elegans
Exon67602   135   II: 10983267-10983401 Caenorhabditis elegans
Exon67612   141   II: 10983794-10983934 Caenorhabditis elegans
Exon67622   124   II: 10983998-10984121 Caenorhabditis elegans
Exon67637   85   II: 10984385-10984469 Caenorhabditis elegans
Exon67647   246   II: 10984517-10984762 Caenorhabditis elegans
Exon67657   142   II: 10985022-10985163 Caenorhabditis elegans
Exon67667   208   II: 10985213-10985420 Caenorhabditis elegans
Exon67677   71   II: 10985485-10985555 Caenorhabditis elegans
Exon67687   30   II: 10986071-10986100 Caenorhabditis elegans
Exon67708   50   II: 10993895-10993944 Caenorhabditis elegans
Exon67719   265   II: 10994145-10994409 Caenorhabditis elegans
Exon67730   213   II: 10995024-10995236 Caenorhabditis elegans
Exon67741   143   II: 10995310-10995452 Caenorhabditis elegans
Exon67752   111   II: 10996164-10996274 Caenorhabditis elegans
Exon67764   133   II: 10998998-10999130 Caenorhabditis elegans
Exon67780   86   II: 11006751-11006836 Caenorhabditis elegans
Exon67793   177   II: 11007016-11007192 Caenorhabditis elegans
Exon67808   516   II: 11007310-11007825 Caenorhabditis elegans
Exon67822   276   II: 11007889-11008164 Caenorhabditis elegans
Exon67836   99   II: 11009181-11009279 Caenorhabditis elegans
Exon67850   1619   II: 11009368-11010986 Caenorhabditis elegans
Exon67864   253   II: 11011040-11011292 Caenorhabditis elegans
Exon67878   246   II: 11011373-11011618 Caenorhabditis elegans
Exon67887   111   II: 11011672-11011782 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:C09D8.1k.1 10975539 11011782 1

1 Sequence

Length
6213

1 Sequence Ontology Term

Identifier Name Description
transcript