WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00198312 Gene Name  T21B10.10
Sequence Name  ? T21B10.10 Organism  Caenorhabditis elegans
Automated Description  Enriched in AVK based on RNA-seq studies. Biotype  SO:0001263
Genetic Position  :± Length (nt)  ? 373
Paste the following link
Quick Links:
SummaryGenomicsOther
 
Quick Links:
SummaryGenomicsOther
 
Lists
This Gene isn't in any lists. Upload a list.

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00198312

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:T21B10.10 T21B10.10 373   II: 8948434-8948806
 

Other

0 CDSs

0 RNAi Result

13 Allele

Public Name
gk963801
gk963053
gk962682
gk962798
gk964215
gk620058
WBVar00174286
ttTi14028
WBVar01438936
WBVar00174287
ttTi14032
WBVar01696045
WBVar01696046

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00198312 8948434 8948806 1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrII_8948807..8952027   3221 II: 8948807-8952027 Caenorhabditis elegans

2 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
Bacteria Diet: L. plantarum with pdxH mutant vs. L. plantarum Transcripts that showed significantly decreased expression in N2 animals fed with L. plantarum with pdxH mutant, comparing to in N2 animals fed with L. plantarum. GFold3, logFC < -1 or > 1. WBPaper00066703:L.plantarum-pdxH_downregulated
  Transcripts significantly enriched in AVK neurons comparing to all cell types at L1 larva stage. edgeR, FDR < 0.001, fold change > 2. WBPaper00055565:AVK_enriched

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00198312 8948434 8948806 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
373

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

1 Upstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrII_8948314..8948433   120 II: 8948314-8948433 Caenorhabditis elegans