WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00271635 Gene Name  T01H3.11
Sequence Name  ? T01H3.11 Organism  Caenorhabditis elegans
Automated Description  Is affected by adr-1; ogt-1; and let-767 based on RNA-seq studies. Biotype  SO:0001263
Genetic Position  :± Length (nt)  ? 418
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Quick Links:
SummaryGenomicsOther
 
Quick Links:
SummaryGenomicsOther
 
Lists
This Gene is in one list:
metrics_list_union (10192)

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00271635

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:T01H3.11 T01H3.11 418   II: 7875787-7876204
 

Other

0 CDSs

11 RNAi Result

WormBase ID
WBRNAi00052174
WBRNAi00074674
WBRNAi00072283
WBRNAi00061486
WBRNAi00035038
WBRNAi00074676
WBRNAi00074675
WBRNAi00074678
WBRNAi00074677
WBRNAi00074673
WBRNAi00074679

6 Allele

Public Name
gk963801
gk963053
gk962682
gk638610
gk349768
WBVar00173725

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00271635 7875787 7876204 1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

0 Downstream Intergenic Region

3 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in ogt-1(ok1474) neuronal cells isolated by FACs comparing to in FACs isolated neuronal cells from wild type. DESeq2, fold change > 2, FDR < 0.05. WBPaper00066485:ogt-1(ok1474)_upregulated_neuron
  Transcripts that showed significantly increased expression in let-767(RNAi) L4 animals comparing to animals fed with empty vector. log2 fold change > 1.5 or < -1.5, p-value < 0.05 WBPaper00066679:let-767(RNAi)_upregulated
  Transcripts that showed significantly decreased expression in adr-1(tm668) comparing to in N2. DESeq2, p-value < 0.05 and a fold enrichment log2fold > 0.5. WBPaper00055226:adr-1(tm668)_downregulated

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00271635 7875787 7876204 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
418

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region