WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00271811 Gene Name  C18H9.13
Sequence Name  ? C18H9.13 Organism  Caenorhabditis elegans
Biotype  SO:0000336 Genetic Position  :±
Length (nt)  ? 627
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Quick Links:
SummaryGenomicsOther
 
Quick Links:
SummaryGenomicsOther
 
Lists
This Gene is in one list:
metrics_list_union (10192)

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00271811

Genomics

0 Transcripts

 

Other

0 CDSs

0 RNAi Result

12 Allele

Public Name
gk963801
gk963053
tm2393
gk145438
gk145437
gk145440
gk145439
gk145436
gk957016
gk551597
gk701662
WBVar00225064

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00271811 6679429 6680055 1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

0 Downstream Intergenic Region

3 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
Bacteria Diet: L. plantarum with pdxH mutant vs. L. plantarum Transcripts that showed significantly decreased expression in N2 animals fed with L. plantarum with pdxH mutant, comparing to in N2 animals fed with L. plantarum. GFold3, logFC < -1 or > 1. WBPaper00066703:L.plantarum-pdxH_downregulated
Bacteria ibfection: Pseudomonas aeruginosa PA14 Transcripts that showed significantly increased expression in N2 animals exposed to PA14, comparing to in N2 animals grown on OP50. fold change > 2, FDR < 0.05 WBPaper00066858:PA14_upregulated_N2
Bacteria infection: Vibrio cholerae A1552, 8 hours at L4 larva stage. Transcripts that showed significantly increased expression in N2 animals infected by bacteria strain Vibrio cholerae A1552. DESeq2 v1.36.0, fold change > 2, FDR < 0.05. WBPaper00067803:V.cholerae_upregulated_N2

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00271811 6679429 6680055 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
627

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

1 Upstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrII_6679371..6679428   58 II: 6679371-6679428 Caenorhabditis elegans