WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00198740 Gene Name  F56D1.11
Sequence Name  ? F56D1.11 Organism  Caenorhabditis elegans
Automated Description  Is affected by daf-2 and lpd-3 based on microarray and RNA-seq studies. Biotype  SO:0001263
Genetic Position  :± Length (nt)  ? 210
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00198740

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:F56D1.11 F56D1.11 210   II: 5463057-5463266
 

Other

0 CDSs

0 RNAi Result

6 Allele

Public Name
gk963801
gk963053
gk963877
gk809667
gk434367
WBVar01437806

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00198740 5463057 5463266 -1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrII_5462409..5463056   648 II: 5462409-5463056 Caenorhabditis elegans

2 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in lpd-3(ok2138) comparing to in N2 animals. DESeq2, fold change > 4, FDR < 0.05. WBPaper00064661:lpd-3(ok2138)_upregulated
  Transcripts that showed significantly decreased expression in daf-2(e1370) comparing to in N2. Student's t-test, fold change > 2, p-value < 0.05. WBPaper00055386:daf-2(e1370)_downregulated

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00198740 5463057 5463266 -1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
210

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

1 Upstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrII_5463267..5465295   2029 II: 5463267-5465295 Caenorhabditis elegans