WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00045083 Gene Name  C04G6.12
Sequence Name  ? C04G6.12 Organism  Caenorhabditis elegans
Automated Description  Is affected by clk-1; daf-2; and ilc-17.1 based on microarray and RNA-seq studies. Biotype  SO:0001267
Genetic Position  :± Length (nt)  ? 75
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00045083

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:C04G6.12 C04G6.12 75   II: 5105157-5105231
 

Other

0 CDSs

8 RNAi Result

WormBase ID
WBRNAi00113186
WBRNAi00039667
WBRNAi00010153
WBRNAi00076078
WBRNAi00028462
WBRNAi00113154
WBRNAi00112956
WBRNAi00113100

4 Allele

Public Name
gk963801
gk963053
tm3859
tm12410

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00045083 5105157 5105231 -1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

0 Downstream Intergenic Region

8 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts depleted in purified oocyte P bodies comparing to in whole oocytes. DESeq2, FDR < 0.05, fold change > 2. WBPaper00065975:P-body_vs_oocyte_depleted
  Transcripts depleted in purified oocyte P bodies comparing to in the whole animal. DESeq2, FDR < 0.05, fold change > 2. WBPaper00065975:P-body_vs_WholeAnimal_depleted
  Transcripts that showed significantly increased expression in ilc-17.1(syb5296) comparing to in N2 animals at L4 larva stage. DESeq2, fold change > 2, FDR < 0.05. WBPaper00066594:ilc-17.1(syb5296)_upregulated
  Up-regulated genes (fold change > 1.5) in two CoQ-deficient clk-1 mutant strains (e2519, qm30) compared to wild types N2. Fold-changes of intensities were calculated from the arithmetic mean of gene expression values between experimental and corresponding control group. Fold change >= 1.5 was used as cut-off. WBPaper00045774:clk-1_upregulated
Bacteria infection: Pseudomonas aeruginosa PA14. 24 hours of exposure. Small RNAs (21-26nt) that showed significantly increased expression after L4 animals were exposed to P .aeruginosa strain PA14 for 24 hours. DESeq2, FDR < 0.05 WBPaper00056868:P.aeruginosa_upregulated_smallRNA
Bacteria Diet: L. plantarum with pdxH mutant vs. L. plantarum Transcripts that showed significantly decreased expression in N2 animals fed with L. plantarum with pdxH mutant, comparing to in N2 animals fed with L. plantarum. GFold3, logFC < -1 or > 1. WBPaper00066703:L.plantarum-pdxH_downregulated
  mRNAs that showed significantly decreased expression in polysomal fractions in daf-2(e1370) comparing to in daf-2(e1370);daf-16(mu86), according to RNAseq study. Differentially expressed genes were determined using cuffdiff across all pairs. WBPaper00046337:polysomal_daf-2_vs_daf-2;daf-16_downregulated
  mRNAs that showed significantly decreased expression in polysomal fractions in N2 comparing to in daf-2(e1370), according to RNAseq study. Differentially expressed genes were determined using cuffdiff across all pairs. WBPaper00046337:polysomal_N2_vs_daf-2_downregulated

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00045083 5105157 5105231 -1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
75

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region