WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C27A2.1.1 Sequence Name  C27A2.1.1
Length (nt)  3402   Chromosome Location  II: 5062125-5067129
Chromosome . Primary Identifier  II Chromosome Location . Start  5062125
Chromosome Location . End  5067129 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C27A2.1.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00016151 smc-5 C27A2.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C27A2.1 C27A2.1 3231   II: 5062137-5062228

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C27A2.1.1 5062125 5067129 1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon49227   104   II: 5062125-5062228 Caenorhabditis elegans
Exon49228   195   II: 5062277-5062471 Caenorhabditis elegans
Exon49229   133   II: 5062527-5062659 Caenorhabditis elegans
Exon49230   465   II: 5062704-5063168 Caenorhabditis elegans
Exon49231   328   II: 5063215-5063542 Caenorhabditis elegans
Exon49232   152   II: 5063591-5063742 Caenorhabditis elegans
Exon49233   393   II: 5064653-5065045 Caenorhabditis elegans
Exon49234   150   II: 5065095-5065244 Caenorhabditis elegans
Exon49235   276   II: 5065293-5065568 Caenorhabditis elegans
Exon49236   279   II: 5065831-5066109 Caenorhabditis elegans
Exon49237   708   II: 5066156-5066863 Caenorhabditis elegans
Exon49238   219   II: 5066911-5067129 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C27A2.1.1 5062125 5067129 1

1 Sequence

Length
3402

1 Sequence Ontology Term

Identifier Name Description
transcript