WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00220022 Gene Name  K10G6.11
Sequence Name  ? K10G6.11 Organism  Caenorhabditis elegans
Automated Description  Is affected by rnp-6 based on RNA-seq studies. Biotype  SO:0001267
Genetic Position  :± Length (nt)  ? 106
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00220022

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:K10G6.11 K10G6.11 106   II: 3970618-3970723
 

Other

0 CDSs

1 RNAi Result

WormBase ID
WBRNAi00001644

6 Allele

Public Name
gk963801
gk963053
gk139658
gk355199
gk336459
gk963726

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00220022 3970618 3970723 1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

0 Downstream Intergenic Region

1 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly altered expression in rnp-6(dh1127) animals comparing to in N2 when fed with heat killed E. coli OP50. Differentially expressed genes (DEGs) (q-value <0.05) between different samples were identified using the stringtie version 1.3.0, followed by Cufflinks version 2.2. WBPaper00059824:rnp-6(dh1127)_regulated_OP50

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00220022 3970618 3970723 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
106

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region