WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00023348 Gene Name  T24E12.7
Sequence Name  ? T24E12.7 Organism  Caenorhabditis elegans
Automated Description  Is affected by eat-2 based on RNA-seq studies. Is affected by metformin; Sirolimus; and rifampin based on RNA-seq studies. Biotype  SO:0000336
Genetic Position  :± Length (nt)  ? 1036
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00023348

Genomics

0 Transcripts

 

Other

0 CDSs

0 RNAi Result

31 Allele

Public Name
gk963801
gk963053
gk964038
gk963599
WBVar02121134
WBVar02122304
WBVar02120459
WBVar02123020
WBVar02124941
WBVar02122783
WBVar02123884
WBVar02121847
WBVar02121951
gk139178
gk139177
WBVar01558788
WBVar02106476
WBVar01304055
WBVar01537848
gk421857
gk858436
gk892625
gk821577
ok5572
WBVar02116871
WBVar01791274
gk705867
gk790004
gk886215
gk697977

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00023348 3761803 3762838 -1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrII_3761700..3761802   103 II: 3761700-3761802 Caenorhabditis elegans

5 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression after animals were treated with 50uM Rifampicin from day 1 to day 3 adult hermaphradite. DESeq2(v1.14.1), fold change > 2, p-value < 0.05 WBPaper00055354:Rifampicin_upregulated
  Transcripts that showed significantly increased expression after animals were treated with 100uM Rapamycin and 50mM Metformin from day 1 to day 3 adult hermaphradite. DESeq2(v1.14.1), fold change > 2, p-value < 0.05 WBPaper00055354:Rapamycin-Metformin_upregulated
  Transcripts that showed significantly decreased expression in eat-2(ad1116) comparing to in N2 at 3-days post L4 adult hermaphrodite animals. DESeq2(v1.14.1), fold change > 2, p-value < 0.05 WBPaper00055354:eat-2(ad1116)_downregulated
Bacteria: Pseudomonas donghuensis HYS Transcripts that showed significantly increased expression after 24 hours of infection by Pseudomonas donghuensis HYS, comparing to control animals exposed to OP50. DESeq2, fold change > 2, FDR < 0.05. WBPaper00068216:HYS_vs_OP50_upregulated
Bacteria: Pseudomonas donghuensis HYS Transcripts that showed significantly decreased expression after 24 hours of infection by Pseudomonas donghuensis HYS with deletion of ferric uptake regulator (FUR), comparing to control animals exposed to HYS. DESeq2, fold change > 2, FDR < 0.05. WBPaper00068216:FUR_vs_HYS_downregulated

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00023348 3761803 3762838 -1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
1036

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

1 Upstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrII_3762839..3763446   608 II: 3762839-3763446 Caenorhabditis elegans