WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00005990 Gene Name  srx-99
Sequence Name  ? F19B10.12 Organism  Caenorhabditis elegans
Automated Description  Is affected by adr-1 based on RNA-seq studies. Biotype  SO:0000336
Genetic Position  II :-6.22839 ±0.001251 Length (nt)  ? 1182
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00005990

Genomics

0 Transcripts

 

Other

0 CDSs

0 RNAi Result

94 Allele

Public Name
gk963801
gk963053
WBVar02121133
gk964038
h4201
WBVar01695414
WBVar02123020
WBVar02123884
WBVar02123572
tm10714
WBVar02120458
WBVar02122782
WBVar00091193
WBVar02121846
WBVar02120788
WBVar02123360
WBVar02124458
WBVar02120618
WBVar02124940
WBVar02121372
WBVar02120934
WBVar00091072
WBVar02121724
WBVar01546623
WBVar01823131
WBVar01655318
WBVar00548822
WBVar00548824
WBVar00548826
WBVar00548828

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00005990 3685952 3687133 -1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrII_3685843..3685951   109 II: 3685843-3685951 Caenorhabditis elegans

1 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly decreased expression in adr-1(tm668) comparing to in N2. DESeq2, p-value < 0.05 and a fold enrichment log2fold > 0.5. WBPaper00055226:adr-1(tm668)_downregulated

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00005990 3685952 3687133 -1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
1182

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

1 Upstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrII_3687134..3687790   657 II: 3687134-3687790 Caenorhabditis elegans